Bioconductor Ribosome profiling

Showing : ribosome profiling • reset

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deseq2 sequencing ribosome profiling riboseq multiple factor design

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by kotcha.m ▴ 10

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deseq2 translation efficiency spikes ribosome profiling

7.5 years ago GFM ▴ 20

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1.2k

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aligning ribosome profiling RNA-Seq

4.7 years ago Crispy • 0

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deseq2 ribosome profiling

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by xiaozhuo ▴ 10

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1.3k

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deseq2 ribosome profiling wald lrt

updated 5.4 years ago by Michael Love 42k • written 5.4 years ago by indrik.wijaya ▴ 20

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840

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deseq2 differential translation ribosome profiling

updated 4.5 years ago by Michael Love 42k • written 4.5 years ago by katerinadouka91 • 0

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R riboseqr ribosome profiling

6.3 years ago bsad • 0

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2.2k

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deseq2 linear model ribosome profiling stats

updated 8.8 years ago by Ryan C. Thompson ★ 7.9k • written 8.8 years ago by Jake ▴ 90

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riboseqr ribosome profiling

updated 8.2 years ago by Thomas J Hardcastle ▴ 180 • written 8.3 years ago by alper.celik • 0

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R riboseqr ribosome profiling

8.6 years ago ohtack9 • 0

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1.9k

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biomart bioconductor grangeslist cds ribosome profiling

updated 7.0 years ago by Hervé Pagès 16k • written 7.0 years ago by Walter F. Baumann ▴ 10

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riboprofiling ribosome profiling

6.7 years ago nicholsonangela7 • 0

12 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180